‘What was Physico-Theology For?’, in A. Blair and K. von Greyerz (eds), Physico-Theology: Religion and Science in Europe, 1650-1750 (Baltimore: Johns Hopkins University Press, 2020), pp. 67-77.
(with D. Levitin), ‘Becoming Heterodox in Seventeenth-Century Cambridge: The Case of Isaac Newton’, in D. Levitin and N. Hardy (eds), Erudition and Confessionalisation in Early Modern Europe (Oxford University Press for the British Academy, 2019), pp. 300-94.
‘Philology and Scepticism: Early Modern Scholars at Work on the Text of the Bible’, in G.M. Cao, A. Grafton and J. Kraye (eds), The Marriage of Philology and Scepticism (London: Warburg Institute, 2019), pp. 123-42.
(ed. with H. Pulte), The Reception of Isaac Newton in Europe, 3 volumes (London: Bloomsbury, 2019).
‘Witches and Forgers: Anthonie van Dale on Biblical History and the Authority of the Septuagint’, in D. van Miert et al. (eds), Scriptural Authority and Biblical Criticism in the Dutch Golden Age (Oxford University Press, 2017), pp. 270-306.
‘The Old Testament and its Ancient Versions in Manuscript and Print in the West, from c. 1480 to c. 1780’, in E. Cameron (ed.), The New Cambridge History of the Bible. Volume Three (Cambridge University Press, 2016), pp. 82-109.
(ed. with J. Weinberg), Jewish Books and their Readers: Aspects of the Intellectual Life of Christians and Jews in Early Modern Europe (Leiden: Brill, 2016).
‘When Manuscripts Meet: Editing the Bible in Greek during and after the Council of Trent’, in A. Blair and A.-S. Goejing (eds), For the Sake of Learning: Essays in Honor of Anthony Grafton (Leiden: Brill, 2016), pp. 251-67.
‘Newton and Eighteenth-Century Christianity’, in R. Iliffe and G. Smith (eds), The Cambridge Companion to Newton, 2nd edition (Cambridge University Press, 2016), pp. 554-85.
‘“The Doors shall fly open”: Chronology and Biblical Interpretation in England, c. 1630-c. 1730’, in K. Killeen, H. Smith, and R. Willie (eds), The Oxford Handbook of the Bible in Early Modern England (Oxford University Press, 2015), pp. 176-95.
‘The Publication and Illustration of Robert Morison’s Plantarum Historiae Universalis Oxoniensis’, Huntington Library Quarterly, 78 (2015), 349-79.
(ed. with M. Ledger-Lomas), Dissent and the Bible in Britain, c. 1650-1950 (Oxford University Press, 2013).
(ed. with J.H.R. Davis), The Warden's Punishment Book of All Souls College, Oxford, 1601-1850 (Woodbridge:Boydell Press for the Oxford Historical Society, 2013).
'The Learned Press: Geography, Science, and Mathematics' (with V. Feola) and 'The Bible Press', both in I. Gadd (ed.), The History of Oxford University Press, Volume One: Beginnings to 1780 (Oxford University Press, 2013), pp. 308-49 and 480-509.
'Early Modern Natural Theologies', in Russell Re Manning (ed.), The Oxford Handbook to Natural Theology (Oxford University Press, 2013), pp. 75-99.
'Isaac Vossius and the Septuagint', in E. Jorink and D. van Miert (eds), Isaac Vossius (1618-1689) between Science and Scholarship (Leiden: E.J. Brill, 2012), pp. 85-117.
'“Bondage in Babylon”: The Bible, Freedom of Conscience, and Ideas of Civil Liberty in England, c. 1640- c. 1750', in C. Bultmann and L. Danneberg (eds), Hebraistik—Hermeneutik—Homiletik. Die >>Philologia Sacra<< im frühneuzeitlichen Bibelstudium (Berlin: W. de Gruyter, 2011), pp. 469-97.
'Origen against Jerome in Early Modern Europe', in S.-P. Bergjan and K. Pollmann (eds), Patristic Tradition and Intellectual Paradigms in the Seventeenth Century (Tübingen: Mohr Siebeck, 2010), pp. 105-35.
'The Library of Peterhouse, Cambridge, and the Problem of the Spatial Arrangement of Knowledge during the Sixteenth and Seventeenth Centuries', in R. Felfe and K. Wagner(eds), Museum, Bibliothek, Stadtraum. Räumliche Wissensordnungen 1600-1900 (Berlin: Lit Verlag, 2010), pp. 23-76.
Codrington's Benefactions (Oxford: All Souls College, 2010).
(ed. with J. van der Meer), Nature and Scripture in the Abrahamic Religions, 4 vols. (Leiden: Brill, 2008).
‘English Scholarship and the Greek Text of the Old Testament, 1620-1720: The Impact of Codex Alexandrinus’, in A. Hessayon and N. Keene (eds), Scripture and Scholarship in Early Modern England (Aldershot: Ashgate, 2006), pp. 74-93.
Donors of Books to Peterhouse (Cambridge: Rampant Lions Press, 2005).
(ed. with M. Pelling), The Practice of Reform in Health, Medicine and Science, 1500-2000 (Aldershot: Ashgate, 2005).
(ed.), Newton and Newtonianism, special issue of Studies in History of Philosophy of Science, Vol. 35A.3, September 2004, pp. 415-680.
Footprints of the Lion: Isaac Newton at Work (Cambridge: Cambridge University Library, 2001).
(with J. Bennett), The Garden, the Ark, the Tower, the Temple. Biblical Metaphors of Knowledge in Early Modern Europe (Oxford: Bodleian Library, 1998).